Index

A

add_df_to_spatialdata() (in module easydecon.easydecon)

assign_clusters_from_df() (in module easydecon.easydecon)

B

batch_size (easydecon.config.Config attribute)

C

common_markers_gene_expression_and_filter() (in module easydecon.easydecon)

composite_score() (in module easydecon.easydecon) Config (class in easydecon.config)

E

easydecon.config module easydecon.easydecon module

easydecon.extra module easydecon.segmentation module easydecon_workflow() (in module easydecon.extra)

F

function_row_auc() (in module easydecon.easydecon) function_row_auc_specific() (in module easydecon.easydecon) function_row_cosine() (in module easydecon.easydecon) function_row_diagnostic() (in module easydecon.easydecon) function_row_euclidean() (in module easydecon.easydecon) function_row_jaccard() (in module easydecon.easydecon)

function_row_mean() (in module easydecon.easydecon) function_row_median() (in module easydecon.easydecon) function_row_overlap() (in module easydecon.easydecon) function_row_spearman() (in module easydecon.easydecon) function_row_sum() (in module easydecon.easydecon) function_row_weighted_jaccard() (in module easydecon.easydecon)

G

get_clusters_by_similarity_on_tissue() (in module easydecon.easydecon)

M

main() (in module easydecon.segmentation) min_max_scale() (in module easydecon.easydecon) module easydecon.config easydecon.easydecon easydecon.extra easydecon.segmentation

N

n_jobs (easydecon.config.Config attribute)

napari_region_assignment() (in module easydecon.easydecon)

P

parse_args() (in module easydecon.segmentation) plot_assigned_clusters_from_dataframe() (in module easydecon.easydecon)

process_row() (in module easydecon.easydecon) process_row_with_suppression() (in module easydecon.easydecon)

R

read_markers_dataframe() (in module easydecon.easydecon)

run_bin2cell_segmentation() (in module easydecon.segmentation)

S

set_batch_size() (in module easydecon.config)

set_n_jobs() (in module easydecon.config) sparse_var() (in module easydecon.easydecon)

T

test_function() (in module easydecon.easydecon)

V

visualize_only_selected_clusters() (in module easydecon.easydecon)