Index

_

__version__ (in module easydecon)

A

assign_clusters_from_df() (in module easydecon)

C

common_markers_gene_expression_and_filter() (in module easydecon)

compute_pseudobulk_deseq_markers() (in module easydecon) compute_reference_profile_markers() (in module easydecon)

D

detect_niches_from_easydecon_result() (in module easydecon)

detect_spatial_niches_from_posteriors() (in module easydecon)

E

easydecon_workflow() (in module easydecon)

EasyDeconResult (class in easydecon)

G

get_clusters_by_similarity_on_tissue() (in module easydecon)

get_table() (in module easydecon)

M

MARKER_ROLE_MODES (in module easydecon)

MarkerSchema (class in easydecon)

P

plot_niche_compositions() (in module easydecon)

prepare_markers() (in module easydecon) PreparedMarkers (class in easydecon)

R

read_markers_dataframe() (in module easydecon) refine_group() (in module easydecon)

RefinedGroupResult (class in easydecon) resolve_marker_columns() (in module easydecon) run_easydecon() (in module easydecon)

S

select_prepared_markers() (in module easydecon) set_batch_size() (in module easydecon) set_n_jobs() (in module easydecon)

standardize_marker_dataframe() (in module easydecon) summarize_easydecon_result() (in module easydecon) summarize_marker_table() (in module easydecon) summarize_niche_compositions() (in module easydecon)

U

UCELL_MARKER_ROLES (in module easydecon)